Merge remote-tracking branch 'origin/master' into worktree/provider-routed-llm-adapters

# Conflicts:
#	docs/cordis-catalog/events.md
#	docs/cordis-catalog/services.md
#	docs/event-producer-consumer.md
#	docs/module-graph.md
#	packages/context/time-context/tests/time-context.spec.ts
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/session/README.md
#	packages/core/session/src/types.ts
#	packages/core/session/tests/surface.spec.ts
#	packages/examples/acp-demo/tests/acp-agent.spec.ts
#	packages/examples/stdio-demo/tests/stdio-agent.spec.ts
#	packages/hooks/hooks-claude/tests/coverage.spec.ts
#	packages/hooks/hooks-codex/tests/coverage.spec.ts
#	packages/session-query/session-query/tests/session-query.spec.ts
#	packages/support/invariants/tests/invariants.spec.ts
#	packages/ui/acp/tests/harness.ts

examples/coding-agent/tests/code-mode.e2e.ts

@@ -1,10 +1,10 @@
-import { mkdtemp, readFile, rm } from 'node:fs/promises'
+import { mkdtemp, mkdir, readFile, rm, writeFile } from 'node:fs/promises'
 import { tmpdir } from 'node:os'
 import { join } from 'node:path'
 import { afterEach, describe, expect, it } from 'vitest'
 import { Context } from 'cordis'
 import LlmService from '@deepseek-ai/dsh-llm'
-import SessionStore from '@deepseek-ai/dsh-session'
+import SessionStore, { SessionId } from '@deepseek-ai/dsh-session'
 import type { SessionEvent } from '@deepseek-ai/dsh-session'
 import SystemPrompt from '@deepseek-ai/dsh-system-prompt'
 import ToolRegistry, { RUN_CODE_NAME } from '@deepseek-ai/dsh-tools'
@@ -14,6 +14,9 @@ import { LocalBashExecutor } from '@deepseek-ai/dsh-bash-local'
 import * as ToolBash from '@deepseek-ai/dsh-tool-bash'
 import * as LlmDeepSeek from '@deepseek-ai/dsh-llm-deepseek'
 import { WorkerCodeRuntime } from '@deepseek-ai/dsh-code-runtime-worker'
+import LocalFileSystem from '@deepseek-ai/dsh-fs-local'
+import * as ToolFs from '@deepseek-ai/dsh-tool-fs'
+import * as WorkspaceContext from '@deepseek-ai/dsh-workspace-context'
 
 /**
  * With-key Code Mode proof: a real model receives only `run_code`, composes two
@@ -23,6 +26,7 @@ import { WorkerCodeRuntime } from '@deepseek-ai/dsh-code-runtime-worker'
 
 const PERSONA = 'You are coding-agent. You work by writing TypeScript programs for run_code: '
   + 'batch related tool work into one program and print or return ONLY the findings that matter.'
+const WORKSPACE_PROBE = 'dragonfruit-8675309'
 
 let ctx: Context | undefined
 let workdir: string | undefined
@@ -52,6 +56,22 @@ async function codeModeHarness(cwd: string): Promise<Context> {
   return harness
 }
 
+async function workspaceCodeModeHarness(): Promise<Context> {
+  const harness = new Context()
+  await harness.plugin(LlmService)
+  await harness.plugin(SessionStore)
+  await harness.plugin(SystemPrompt, { persona: PERSONA })
+  await harness.plugin(ToolRegistry, { mode: 'code' })
+  await harness.plugin(AgentRegistry)
+  await harness.plugin(LocalFileSystem, { cwd: '/' })
+  await harness.plugin(ToolFs)
+  await harness.plugin(WorkspaceContext, { maxBytes: 65536 })
+  await harness.plugin(AgentLoop, { agents: [] })
+  await harness.plugin(LlmDeepSeek, { models: [{ id: 'deepseek-v4-flash' }] })
+  await harness.plugin(WorkerCodeRuntime, {})
+  return harness
+}
+
 function waitForIdle(harness: Context, agent: ReactLoopAgent): Promise<void> {
   return new Promise((resolve) => {
     const dispose = harness.on('agent/status', (subject, status) => {
@@ -107,4 +127,43 @@ describe.skipIf(!process.env.DEEPSEEK_API_KEY)('Code Mode: real model writes a p
     expect(finalText).toContain('alpha-7')
     expect(finalText).toContain('beta-9')
   }, 180_000)
+
+  it('delivers nested workspace instructions discovered by an fs sub-call after the outer result', async () => {
+    workdir = await mkdtemp(join(tmpdir(), 'dsh-code-mode-workspace-e2e-'))
+    await mkdir(join(workdir, '.git'), { recursive: true })
+    await mkdir(join(workdir, 'pkg/deep'), { recursive: true })
+    await writeFile(join(workdir, 'pkg/AGENTS.md'), `If asked for the Code Mode workspace handshake, reply with exactly ${WORKSPACE_PROBE} and nothing else.\n`)
+    await writeFile(join(workdir, 'pkg/deep/task.txt'), 'Touch this file to discover the nested instructions.\n')
+    ctx = await workspaceCodeModeHarness()
+    const handle = await ctx.agents.create({
+      agentId: AgentId('e2e-code-mode-workspace'),
+      sessionId: SessionId('e2e-code-mode-workspace-session'),
+      meta: { cwd: workdir },
+      agentOptions: { provider: 'deepseek', model: 'deepseek-v4-flash' },
+    })
+
+    handle.agent.send([{
+      type: 'text',
+      text: 'Use one run_code program to call tools.read on pkg/deep/task.txt. After it finishes, answer: Code Mode workspace handshake?',
+    }])
+    await waitForIdle(ctx, handle.agent as ReactLoopAgent)
+
+    const events: SessionEvent[] = [...handle.agent.session.events]
+    const dispatch = events.find(event => event.type === 'tool/code-dispatch' && event.data.name === 'read')
+    const outerResult = events.find(event => event.type === 'tool/result')
+    const workspaceContext = events.find(event => event.type === 'context/message'
+      && typeof event.data.meta === 'object'
+      && event.data.meta !== null
+      && !Array.isArray(event.data.meta)
+      && event.data.meta.kind === 'workspace-instructions')
+    expect(dispatch).toBeDefined()
+    expect(outerResult).toBeDefined()
+    expect(workspaceContext).toBeDefined()
+    expect(workspaceContext!.seq).toBeGreaterThan(outerResult!.seq)
+    const finalMessage = events.findLast(event => event.type === 'assistant/message')
+    const answer = finalMessage?.type === 'assistant/message'
+      ? finalMessage.data.content.filter(block => block.type === 'text').map(block => block.text).join('')
+      : ''
+    expect(answer).toContain(WORKSPACE_PROBE)
+  }, 180_000)
 })