feat: Code Mode — the registry's mode config, the SDK codegen, and the run_code bridge

The dsh-tools half of the Code Mode RFC (its fourth, final change): the
registry gains its first config — mode: native | code | both — and OWNS how
its tools reach the model. 'code' contributes exactly one wire tool,
run_code, plus a lazy tools:sdk prompt section declaring every other tool
as a generated TypeScript API (jsonSchemaToTs: total over the defineTool
subset, unknown degradation, lexicographic byte-identical rendering);
'both' ships both representations; 'native' is byte-for-byte the old
behavior. Non-native modes fail every assembly loudly without a
typescript-language ctx.codeRuntime.

run_code's dispatch bridge: JSON-normalizes each binding argument before
dispatch (what dispatches is what the tool/code-dispatch event logs — the
append can never fail on payload shape; BigInt/circulars reject that one
call), serializes all program tool calls through a per-run queue (even
Promise.all — no concurrency-safety metadata yet), routes every sub-call
through tools/pre-execute → tools/post-execute (a deny rejects the
program-side promise), drops sub-call additionalContext (no safe outlet
mid-run; pinned), owns a run-scoped abort that follows the outer signal in
and fires on settlement (in-flight sub-dispatch aborted, queued abandoned,
queue drained before returning), and converts a failed run into
CodeRunFailedError → a structured isError carrying kind + captured logs.
tool/code-dispatch joins SessionEventMap by declaration merging (log-only;
deriveMessages ignores it).

The composed surface: the tools config forwards through agent-core and
both app packages; examples/code-agent + demo:code run the worker runtime
under mode code (keyless boot smoke + a with-key e2e proving the collapsed
[run_code] header, the dispatch events, and the file the program wrote);
two new snapshot scenarios (code-mode-turn, both-mode-turn) record the SDK
section, collapsed header, dispatch events, and result card — each its own
header-pinning class (the harness gains per-scenario config overlays and
per-class pins). Catalogs, graphs, cookbook, hooks-bridge notes, and the
RFC (moved to implemented/, restructured to decision-era headings) updated
in the same change.

docs/module-graph.md

@@ -112,7 +112,9 @@ flowchart TD
   pkg_llm_replay --> pkg_llm
   pkg_llm_replay --> pkg_session
   pkg_tools --> pkg_agent
+  pkg_tools --> pkg_code_runtime
   pkg_tools --> pkg_llm
+  pkg_tools --> pkg_session
   pkg_tools --> pkg_system_prompt
   pkg_compact_basic --> pkg_agent
   pkg_compact_basic --> pkg_compact
@@ -201,12 +203,14 @@ flowchart TD
   pkg_acp_agent --> pkg_agent_core
   pkg_acp_agent --> pkg_app_boot
   pkg_acp_agent --> pkg_session_persistence_jsonl
+  pkg_acp_agent --> pkg_tools
   pkg_stdio_agent --> pkg_agent
   pkg_stdio_agent --> pkg_agent_core
   pkg_stdio_agent --> pkg_app_boot
   pkg_stdio_agent --> pkg_llm
   pkg_stdio_agent --> pkg_session
   pkg_stdio_agent --> pkg_session_persistence_jsonl
+  pkg_stdio_agent --> pkg_tools
 ```
 
 | Package | Group | Depends on |
@@ -235,7 +239,7 @@ flowchart TD
 | [`hook-protocol`](../packages/hooks/hook-protocol) | `hooks` | [`bash`](../packages/bash/bash), [`session`](../packages/core/session) |
 | [`session-persistence`](../packages/session-persistence/session-persistence) | `session-persistence` | [`session`](../packages/core/session) |
 | [`llm-replay`](../packages/support/llm-replay) | `support` | [`llm`](../packages/llm/llm), [`session`](../packages/core/session) |
-| [`tools`](../packages/core/tools) | `core` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`system-prompt`](../packages/core/system-prompt) |
+| [`tools`](../packages/core/tools) | `core` | [`agent`](../packages/core/agent), [`code-runtime`](../packages/code-runtime/code-runtime), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt) |
 | [`compact-basic`](../packages/compact/compact-basic) | `compact` | [`agent`](../packages/core/agent), [`compact`](../packages/compact/compact), [`llm`](../packages/llm/llm), [`session`](../packages/core/session) |
 | [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl) | `session-persistence` | [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence) |
 | [`session-persistence-sqlite`](../packages/session-persistence/session-persistence-sqlite) | `session-persistence` | [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence) |
@@ -256,5 +260,5 @@ flowchart TD
 | [`subagent-mock`](../packages/support/subagent-mock) | `support` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`subagent`](../packages/subagent/subagent) |
 | [`subagent-fork`](../packages/subagent/subagent-fork) | `subagent` | [`agent`](../packages/core/agent), [`session`](../packages/core/session), [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
 | [`subagent-spawn`](../packages/subagent/subagent-spawn) | `subagent` | [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
-| [`acp-agent`](../packages/ui/acp-agent) | `ui` | [`acp`](../packages/ui/acp), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl) |
-| [`stdio-agent`](../packages/ui/stdio-agent) | `ui` | [`agent`](../packages/core/agent), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl) |
+| [`acp-agent`](../packages/ui/acp-agent) | `ui` | [`acp`](../packages/ui/acp), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`tools`](../packages/core/tools) |
+| [`stdio-agent`](../packages/ui/stdio-agent) | `ui` | [`agent`](../packages/core/agent), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`tools`](../packages/core/tools) |