Commit Graph
44 Commits
Author SHA1 Message Date
Hypatia May dc2ea3a1b4 fix(sqlite): lock before ownership validation 2026-07-24 11:20:47 +08:00
Hypatia May e54a4ad986 fix(sqlite): match reserved object names literally 2026-07-24 11:11:45 +08:00
Hypatia May 19b96037f6 fix(sqlite): enforce integer session metadata 2026-07-24 10:35:09 +08:00
Hypatia May 0e7fee95c0 fix(sqlite): preserve session metadata contracts 2026-07-23 22:08:58 +08:00
Hypatia May 9482affc48 fix(session-query): make persisted observation non-mutating 2026-07-23 21:33:28 +08:00
Hypatia May c1fa985c20 Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	docs/architecture.i18n.yaml
#	packages/client/ui-sidebar/tests/sidebar-root.spec.tsx
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence/README.md
2026-07-23 21:13:29 +08:00
Tianyi Cui a5cb16cc0e Merge master into codex/jsonl-storage-identity 2026-07-23 20:12:26 +08:00
Hypatia May 0a0f19cf57 Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	.agents/notes/implemented/feature/2026-07-10-session-query-service.md
#	.agents/notes/implemented/feature/2026-07-10-sqlite-session-query-provider.md
#	.agents/notes/proposed/feature/2026-07-10-sqlite-session-query-provider.md
#	docs/architecture.md
#	docs/capability-seams.md
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/core.md
#	docs/core-data-structures/persistence.md
#	docs/core-data-structures/session-query.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	packages/README.md
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/hooks/hooks-claude/tests/coverage.spec.ts
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
#	packages/session-persistence/session-persistence-sqlite/README.md
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/schema.ts
#	packages/session-persistence/session-persistence-sqlite/tests/sqlite.spec.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/package.json
#	packages/session-query/README.md
#	packages/session-query/session-query/README.md
#	packages/session-query/session-query/package.json
#	packages/session-query/session-query/src/config.ts
#	packages/session-query/session-query/src/index.ts
#	packages/session-query/session-query/src/types.ts
#	pnpm-lock.yaml
#	scripts/gen-doc-graphs.ts
#	scripts/type-equiv.manifest.json
#	tsconfig.host.json
#	tsconfig.json
2026-07-23 13:56:56 +08:00
Tianyi Cui ec1e1394ed Merge commit 'refs/codex/unblock/master-current' into HEAD
# Conflicts:
#	docs/config-catalog.md
#	packages/session-persistence/session-persistence-jsonl/README.md
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
2026-07-21 20:28:30 +08:00
Yichen Jiang 8ce5989ffb Merge remote-tracking branch 'origin/master' into worktree/semantic-session-checkpoints
# Conflicts:
#	docs/event-producer-consumer.md
#	docs/module-graph.md
#	examples/tui-agent/tests/tui-keyless-smoke.e2e.ts
#	packages/examples/acp-demo/package.json
#	packages/examples/cli-demo/tsconfig.json
#	packages/support/invariants/src/index.ts
#	packages/support/invariants/tests/invariants.spec.ts
#	pnpm-lock.yaml
2026-07-21 20:09:37 +08:00
Yichen Jiang 6d12e3ab41 fix(session): add semantic crash checkpoints 2026-07-21 14:50:06 +08:00
Tianyi Cui 8ee54bcb22 Merge latest invariant registration gate
# Conflicts:
#	docs/event-producer-consumer.md
2026-07-20 20:20:10 +08:00
Tianyi Cui 5f806b96f0 Merge latest invariant service seam 2026-07-20 20:19:14 +08:00
Tianyi Cui 1145ee5fc3 fix(invariants): assert runtime relationships, not API shapes 2026-07-20 19:34:19 +08:00
Tianyi Cui 3b7ce2e682 fix(invariants): require justified empty companions 2026-07-20 18:39:37 +08:00
Tianyi Cui 73e3f658c6 fix(persistence): bind JSONL identity before mutation
JSONL discovered a log by the requested session id but later routed repair and append from the parsed header. A log selected for session A could therefore declare session B and redirect mutation to B.

Validate the requested id and exact header-derived cwd-bucket path before returning a stored prefix, reject duplicate ids across buckets, and repeat the id/cwd guards in the coordinator before repair or state publication. Collapse the redundant loadLive hook into loadStored while retaining the existing bucket layout and one-live-writer topology, avoiding flat-layout churn and a locator generic that SQLite and test backends do not need.
2026-07-20 17:42:44 +08:00
Tianyi Cui 941b0411d8 feat(invariants): implement package runtime checks 2026-07-20 00:38:37 +08:00
Tianyi Cui 433670a754 feat(invariants): require package-owned companions 2026-07-19 22:13:50 +08:00
Yichen Jiang 0d00106fa8 fix(session): persist the delegation depth in the session header
A subagent child's recursion depth lived only in runtime AgentOptions,
so a persisted child came back from resume counted as top-level and
maxDepth stopped binding after every restart. Add
SessionHeader.delegationDepth, round-trip it through the JSONL and
SQLite backends (SQLite schema v5), restore it on agent-loop resume,
and write it when the in-process backends create a child. The seam now
owns the shared depth vocabulary (delegationDepthOf): the persisted
header is authoritative and monotone — runtime options may deepen it
but never lower it.
2026-07-19 17:20:36 +08:00
Tianyi Cui 176973cb7b docs(session-persistence): clarify SQLite permission limits 2026-07-19 11:51:22 +08:00
Tianyi Cui 85fc58943e docs(session-persistence): tighten SQLite permission prose 2026-07-19 11:37:41 +08:00
Yichen Jiang eb86fce086 Merge remote-tracking branch 'origin/master' into worktree/fix-sqlite-file-permissions
# Conflicts:
#	docs/config-catalog.md
2026-07-17 23:06:20 +08:00
Yichen Jiang ac893f97bb fix(session-persistence): address permission review 2026-07-17 10:47:32 +08:00
Yichen Jiang 96975f3840 fix(session-persistence): create SQLite databases owner-only 2026-07-17 10:15:19 +08:00
Hypatia May 75e9958f11 fix(session-query): close review edge cases (round 4) 2026-07-17 09:39:39 +08:00
Hypatia May aa82ba4abc Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/module-graph.md
#	packages/session-persistence/session-persistence-jsonl/README.md
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/README.md
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/schema.ts
#	packages/session-persistence/session-persistence-sqlite/tests/sqlite.spec.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/src/coordinator.ts
#	packages/session-persistence/session-persistence/tests/persistence.spec.ts
#	packages/session-query/session-query/README.md
2026-07-15 16:17:59 +08:00
Hypatia May 35edf2a825 fix(session-query): qualify persistence revisions by store 2026-07-15 12:32:18 +08:00
Hypatia May f88ca85ffd fix(session-query): harden SQLite search reconciliation 2026-07-15 12:10:24 +08:00
Yichen Jiang 904397a7ef Merge remote-tracking branch 'origin/master' into codex/agent-session-jsonl-location
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.1.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.2.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.jsonl
#	examples/acp-agent/tests/snapshots/both-mode-turn/session.jsonl
#	examples/acp-agent/tests/snapshots/permission-switching/session.jsonl
#	examples/acp-agent/tests/snapshots/skill-load/session.jsonl
#	examples/acp-agent/tests/snapshots/text-turn/session.jsonl
#	packages/session-persistence/session-persistence/src/index.ts
2026-07-15 11:12:39 +08:00
Yichen Jiang 0d67c16d56 Merge remote-tracking branch 'origin/master' into codex/agent-session-jsonl-location
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/bash.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	docs/rfc/implemented/architecture/2026-06-30-bash-stdin-env-trusted-plugin-surface.md
#	docs/rfc/implemented/feature/2026-06-30-hook-bridges.md
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.1.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.2.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/both-mode-turn/session.jsonl
#	examples/acp-agent/tests/snapshots/both-mode-turn/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/code-mode-turn/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/skill-load/session.jsonl
#	examples/acp-agent/tests/snapshots/text-turn/session.jsonl
#	examples/sandbox-acp-agent/tests/snapshots/mode-switching/session.jsonl
#	packages/bash/bash-local/README.md
#	packages/bash/bash-local/src/run.ts
#	packages/bash/bash-local/tests/run.spec.ts
#	packages/bash/bash/README.md
#	packages/bash/tool-bash/README.md
#	packages/bash/tool-bash/src/index.ts
#	packages/bash/tool-bash/tests/tools.spec.ts
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/agent-core/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/src/index.ts
#	packages/ui/acp-agent/README.md
#	packages/ui/stdio-agent/README.md
2026-07-14 18:04:05 +08:00
Tianyi Cui 34a059c9bc Merge remote-tracking branch 'origin/master' into codex/simp-session-dead-surface
# Conflicts:
#	docs/cordis-catalog/services.md
#	packages/core/session/README.md
#	packages/core/session/tests/derived-cache.spec.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
#	packages/session-persistence/session-persistence/src/coordinator.ts
#	packages/session-persistence/session-persistence/src/index.ts
2026-07-14 17:24:02 +08:00
Tianyi Cui 148046b9c8 docs: rebalance prose cleanup and add trimming skill 2026-07-13 23:27:00 +08:00
Tianyi Cui d060c0dd4f refactor: prune dead session surfaces 2026-07-13 23:25:20 +08:00
Tianyi Cui 75838e10b5 docs: trim generated prose 2026-07-12 03:36:43 +08:00
Yichen Jiang eea0a99985 feat: expose agent session log location 2026-07-10 20:52:27 +08:00
Tianyi Cui cd9737d569 Gate JSDoc completeness on every package export
New doc-sync gate verify-export-jsdoc walks every module-level exported
name under packages/*/*/src and requires description prose everywhere,
plus @param per parameter and @returns on non-void annotated returns for
function-like exports, public class methods, properties, and accessors.
The parsing + check helpers move out of gen-cordis-catalog.ts into a
shared scripts/jsdoc.ts so 'documented' means one thing on both gated
surfaces.

Deliberate exemptions (documented in the RFC): heritage-declared class
members (the seam declaration is the doc's one home — the one checker
query in an otherwise pure-AST walk), cordis plugin-protocol slots
(name/inject/reusable/Config/apply, top-level and static), constructors,
overload implementations, declare-module augmentation bodies, and
re-export statements (checked at the defining module).

The 203 under-documented exports the gate found at adoption are filled
in this change, so the gate lands green; generated catalogs/graphs are
regenerated for the shifted line pointers.

RFC: docs/rfc/implemented/process/2026-07-06-export-surface-jsdoc-gate.md
2026-07-06 22:09:30 +08:00
Tianyi Cui 774d460889 Expose audited hardcoded tunables as plugin config
The audit swept every packages/*/* plugin for the new AGENTS.md
convention (no hardcoded tunables in plugins) and exposes each finding
as a defaulted, validated Config field. Defaults are the previously
hardcoded values throughout, so no deployment or golden changes.

- tool-fs (had NO Config): readLimit, readMaxLineLength, readMaxBytes,
  readStreamMinSize. The caps thread through ReadToolCaps/ReadWindow —
  read-render already documented that the consumer applies the caps, so
  they become explicit per-request fields.
- tool-web: searchMaxResults (WEB_SEARCH_MAX_RESULTS stays as the
  schemastery default). Also fixes the stale GREP_LIMIT references in
  search.ts and the web-capability-seam RFC (no such constant exists).
- bash-local: graceMs (SIGTERM->SIGKILL escalation grace). The
  RunInternals.graceMs test seam is gone: graceMs is now a required
  SpawnSpec field filled from config, so tests exercise the real
  config path and the defaults live in exactly one place.
- subagent-acp: disposeEofGraceMs / disposeGraceMs. The AcpRunSpec
  fields become required for the same one-defaulting-layer reason.
- session-persistence-sqlite: journalMode ('wal' default; the
  rollback-journal modes serve filesystems where WAL's shared-memory
  files do not work, e.g. network mounts).
- hooks-claude + hooks-codex: stderrSummaryMaxChars for the persisted
  hook/result stderr summary. The duplicated summarize() helpers merge
  into hook-protocol's summarizeStderr(stderr, maxChars), beside the
  HookResultRecord field it feeds, with the bound parameterized the
  same way runHook's defaultTimeoutMs already is.
- compact-basic: charsPerToken for the token estimator (default 4, the
  English-text heuristic; CJK-heavy deployments need ~1-2 or compaction
  fires far too late). Also corrects the BasicCompactService class doc,
  which claimed defaults the required-field config never had.
- fs-local: deletes the dead STREAM_MIN_SIZE constant and the dead
  FsIoInternals.streamMinSize seam — the read-routing bound lives in
  the consumer (tool-fs), where it is now config. This is item 1 of
  the proposed prune-write-only-fs-surface RFC, annotated accordingly.

Every new field gets range validation (following the existing
assertPositiveFinite pattern), a README row, and tests covering the
configured behavior, the schema default, and load-time rejection.
2026-07-04 17:37:23 +08:00
Hypatia May 828c3f85c9 fix review findings: skip collided SCHEMA_VERSION 3; reject marker-less surface events
P1: both merge parents shipped SCHEMA_VERSION=3 for different layouts (surface
columns vs seed_length), so an on-disk 3 was ambiguous and wrongly accepted.
Bump to 4 (merged layout) so the version check rejects both sibling v3s.

P2: a surface-eligible event with no surfaceOp lands in the log but vanishes
from deriveMessages() (surface is the sole derivation path). The typed append
overload enforces the marker only when the type arg is a literal; it collapses
to optional when widened to the union (a caller iterating raw events). Guard at
runtime in both append() and the seed constructor — no backward-compat for
surface-less logs. Shared seed fixtures carry surfaceOp explicitly and the
appendLog helper forwards it verbatim (no synthesized default). Exports
isSurfaceEligibleType. Regression tests for all three, each verified to fail
on the unfixed code.

Gates: typecheck, test (1115), snapshot (14), doc-sync, lint, build, hygiene green.
2026-06-24 17:45:48 +08:00
Hypatia May 9cc8dc371e Merge remote-tracking branch 'origin/master' into session-surface
Reconciles the session-surface work (surfaceOp/sourceEventSeqs provenance as
the sole derivation path) with master's worktree-subagent series (fork-seed
boundary + out-of-process subagent backends).

Semantic reconciliations beyond the textual auto-merge:
- SQLite SCHEMA_VERSION: both sides bumped 2->3. Merged to a single v3 carrying
  BOTH column families — master's seed_length on `sessions` and surface's
  source_event_seqs/surface_op on `events`. writeRow + both INSERT sites bind
  the full set; the schema doc lists all three added columns as the v2->v3 gap.
- agent-loop runStep request: master's `sessionId: session.id` and surface's
  per-append surfaceOp/sourceEventSeqs coexist (different regions).
- Fork seed + surface: a fork seeds the child from the parent's LIVE events,
  which now carry surfaceOp, so the child's surface rebuilds correctly. Verified
  end-to-end — the subagent-fork replay recalls the inherited "SAFFRON" codeword
  through the seeded prefix.
- Subagent snapshot fixtures (recorded pre-surface) re-enriched via KEYLESS
  deterministic replay: only surfaceOp/sourceEventSeqs added onto existing
  recorded lines (matched by seq), no recorded value changed. Not re-recorded
  against the live API.

Gates: typecheck, test (1112), test:snapshot (14), doc-sync, lint, build,
hygiene all green.
2026-06-24 10:48:01 +08:00
Hypatia May 30805e1983 fix(sqlite): bump SCHEMA_VERSION to 3 for the new surface columns 2026-06-23 09:48:15 +08:00
Tianyi Cui b3d40d427e Persist the seed boundary so fork-child replay routes correctly
A fork subagent seeds its child session with a prefix of the parent's log, and
that seed becomes the child's persisted log — so a fork child's .jsonl begins
with the PARENT's events, including the parent's assistant/chunk events. The
snapshot replay harness derived a child's script from its whole log, which would
replay the parent's recorded responses as the child's model calls. Spawn-only
scenarios never hit it, but a fork snapshot would mis-route silently.

Record the seed boundary and skip the inherited prefix at replay:

- SessionHeader gains an optional `seedLength` (how many leading events were
  inherited via a seed), threaded through CreateSessionOptions/CreateAgentOptions
  meta and stamped by the fork backend (= seeded-prefix length; absent for spawn).
  It is EXPLICIT, never inferred from seed.length: a resume seeds the whole stored
  log, so the resume path passes the persisted boundary back.
- Both persistence backends round-trip it: JSONL header line, SQLite seed_length
  column. The SQLite table change bumps SCHEMA_VERSION 2->3; per the pre-release
  stance the backend rejects an older user_version on open with NO migration.
- llm-replay's parseSessionHeader reads seedLength and loadSessionScripts derives
  a child script from events AFTER the boundary. seedLength is 0 for spawn, so
  spawn replay is byte-for-byte unchanged.

Closes the routing-correctness gap the per-session snapshot replay RFC under-
stated; a recorded fork scenario remains a future addition but now derives
correctly. RFC: docs/rfc/implemented/testing/2026-06-22-fork-child-replay-seed-boundary.md.

Regression coverage: a fork child fixture whose seeded prefix carries a parent
chunk (derived script must exclude it, proven red without the slice); a seedLength
persistence round-trip through the shared coordinator contract (both backends);
the fork backend stamping it; resume preserving it from the persisted header.
2026-06-22 20:55:32 +08:00
Hypatia May 0298f5c6f0 Merge remote-tracking branch 'origin/master' into session-surface
Reconcile the session-surface feature with master's package reorg and
simplifications:

- Adopt master's folded usage (assistant/message.usage; standalone `usage`
  event dropped) and re-attach surface metadata (surfaceOp/sourceEventSeqs).
- Add surface opts to master's new max-tokens assistant/message append.
- Port surface columns onto the coordinator-refactored SQLite backend at its
  new path; drop the dead v1->v2 migration (bump-and-reject, no migration per
  pre-release policy).
- Move the session-surface RFC into implemented/architecture/ and refresh its
  stale body (no migration, SESSION_FORMAT_VERSION=0, renamed package paths).
- Update the core-data-structures catalog SessionEvent blocks for the two new
  surface fields; regenerate the cordis catalog.
- Re-harvest ACP snapshot fixtures (keyless replay) to carry surface metadata.
2026-06-22 10:35:59 +08:00
Tianyi Cui 7792347c4f simplify(seams): prune dead methods from the persistence and bash seams
Two capability seams carried abstract methods no production consumer calls.
A method no consumer programs against is not a seam — it is speculative
surface every implementation must still provide and test.

- SessionPersistence: remove has() and delete(), the coordinator's
  has/delete/deleteCore, and the PersistenceBackend.deleteStored hook (with its
  jsonl + sqlite + in-spec memory-stub impls). Surviving service surface:
  create/append/load/list. Production uses only load() (resume) and list()
  (ACP session/list).
- BashExecutor: remove get(id) and list(), the abstract decls and the
  LocalBashExecutor impls. The internal tasks map survives (it backs
  ownerOf/readOutput/kill); get/list were pure public accessors over it with no
  shipping caller and no bash_list tool.
- Migrate tests that reached through ctx.bash.get(id) to the public completion
  seam: a doneFor(id) helper over onTaskDone awaits a task by id, and the
  HMR-reload ownership test now proves task survival through A's own bash_output
  ([status: running]) plus ownerOf + B-rejection — a stronger through-the-tool
  assertion than the removed lookup peek.
- Update seam READMEs (six -> four service methods, drop the deleteStored hook
  and the get/list row) and the two implemented persistence RFCs in place.

Implements docs/rfc/implemented/simplification/2026-06-20-prune-dead-seam-methods.md
2026-06-21 02:17:27 +08:00
Tianyi Cui d02e9f1bd6 Reorganize packages into a modular hierarchy
Move the 18 flat packages/<name> packages into role-grouped dirs:
core/, llm/, bash/, session-persistence/, ui/, support/. Group dirs are
pure containers; each package keeps its @deepseek-ai/dsh-* name.

Collapse the per-package tsconfig paths maps (base + typecheck) into one
@deepseek-ai/dsh-* wildcard with a candidate per group, and derive the
publint list from the hierarchy. Update all depth-coupled globs/configs
(workspace, tsdown, vitest, eslint, knip, tsconfig includes/refs,
per-package tsconfigs, generators, doc-script scopes, type-equiv manifest)
and the cross-package/script relative imports in tests.

Fix doc-typecheck's workspacePaths() to parse tsconfig JSONC via the
TypeScript API instead of a regex comment-strip, which corrupted the
new wildcard `/*/` path candidates.

WIP: doc cross-links and package/RFC docs still to update.
2026-06-20 22:55:20 +08:00