- Clone patch lists per generation (boot + composeLive): the include pushes
insert rows by reference and mutates them in place, so a reused object
baked user overrides into bundle rows and removal could not revert; the
built-bin hot-reload e2e now asserts an override AND its removal reverting.
- The headless runner awaits Loader settlement before prompting (its inject
gate covers only apiProxy/httpServer) and abandons cleanly when the tree
died during the wait.
- healProfilesModuleFallback walks the app's full dependency+peer closure:
out-of-tree plugins import seam packages (dsh-compact, dsh-subprocess, ...)
that only implementations reach, and peers are how seams are declared.
- Profile init writes pnpm-workspace.yaml (nodeLinker: hoisted), not .npmrc
— pnpm >=10 reads settings from the workspace manifest.
- Web dumps reject boot-only flags instead of printing a tree that differs
from the same invocation's boot; --port validates at the flag;
--dump-default-config no longer parses the (possibly broken) user layer;
trustedHosts flag derivation merges over the composed value instead of
replacing it; web-runtime gains surfaceContext (headless disables the GUI
prompt/bash-vars the old -p never mounted); 'node_modules' is a reserved
profile name; plugin-warning names the recovery step; client AGENTS.md
registration surfaces point at the web-app bundle.
- Ship session-reference/tmux-context/tool-ask-user as app dependencies for
terminal front-door patch layers (turtle-ui), same stance as mcp-client.